Actually, all the cards are the same height. They just are a bit taller than advertised (mine have a similar problem). A friend of mine had the Tachyon/Ra/Tempest misprint, and it is a different concern than what the OP was talking about. While the mis-sized Tachyon/Ra/Tempest decks are a straight up misprint, the taller EE cards seem to be something that happened on pretty much all of the EE cards (as far as I am aware).
It's a rather difficult situation for the sleeve-minded Sentinel. Sleeves that stick over the top make the cards too large to fit in the box horizontally, and card sleeves that fit in the box are too small for the cards. Sadly, you may just have to buy premium standard sleeves and trim the excess off by hand if you want sleeves that fit the cards and the box, which doesn't sound like fun. I'm probably just going to buy premium Mayday sleeves and do my best to treat that little overhang with care.